MersV1, France, Analysis, bibRecord, 000011

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Identifieur interne : 000011 ( France/Analysis ); précédent : 000010; suivant : 000012

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Auteurs : Benjamin Linard [France] ; Krister Swenson [France] ; Fabio Pardi [France]

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2019.

RBID : pubmed:30698645

Abstract

Taxonomic classification is at the core of environmental DNA analysis. When a phylogenetic tree can be built as a prior hypothesis to such classification, phylogenetic placement (PP) provides the most informative type of classification because each query sequence is assigned to its putative origin in the tree. This is useful whenever precision is sought (e.g. in diagnostics). However, likelihood-based PP algorithms struggle to scale with the ever-increasing throughput of DNA sequencing.

DOI: 10.1093/bioinformatics/btz068
PubMed: 30698645

Affiliations:

Links to Exploration step

pubmed:30698645

Le document en format XML

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   |wiki=    Sante
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Serveur d'exploration MERS

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration MERS
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.